COPASI

COPASI is a powerful software application designed for modeling, simulating, and analyzing advanced biochemical networks. It provides robust tools for dynamic simulation using either deterministic methods like ordinary differential equations (ODEs) or stochastic methods such as Gillespie's algorithm. The software fully supports the Systems Biology Markup Language (SBML), ensuring seamless import, export, and interoperability with other computational biology tools. With COPASI, researchers can investigate system behavior, perform parameter scans, and conduct optimization tasks, all within an intuitive interface that streamlines the workflow from model creation to result interpretation.